LOOS  v2.3.2
loos::PDB Member List

This is the complete list of members for loos::PDB, including all inherited members.

alignOnto(const AtomicGroup &)loos::AtomicGroup
allHaveProperty(const Atom::bits &property) const loos::AtomicGroup
anyHaveProperty(const Atom::bits &property) const loos::AtomicGroup
append(pAtom pa)loos::AtomicGroupinline
append(std::vector< pAtom > pas)loos::AtomicGroup
append(const AtomicGroup &grp)loos::AtomicGroup
apply(T func)loos::AtomicGroupinline
applyTransform(const XForm &)loos::AtomicGroup
AtomicGroup() (defined in loos::AtomicGroup)loos::AtomicGroupinline
AtomicGroup(const int n)loos::AtomicGroupinline
AtomicGroup(const AtomicGroup &g)loos::AtomicGroupinline
atomOrderMapFrom(const AtomicGroup &g)loos::AtomicGroup
atoms (defined in loos::AtomicGroup)loos::AtomicGroupprotected
autoTerminate(void) const (defined in loos::PDB)loos::PDB
autoTerminate(bool b)loos::PDB
begin(void) (defined in loos::AtomicGroup)loos::AtomicGroupinline
begin(void) const (defined in loos::AtomicGroup)loos::AtomicGroupinline
boundingBox(void) const loos::AtomicGroup
box (defined in loos::AtomicGroup)loos::AtomicGroupprotected
centerAtOrigin(void)loos::AtomicGroup
centerOfElectrons(void) const loos::AtomicGroup
centerOfMass(void) const loos::AtomicGroup
centrifyByMolecule() const loos::AtomicGroup
centrifyByResidue() const loos::AtomicGroup
centroid(void) const loos::AtomicGroup
clearBonds(void)loos::AtomicGroup
clone(void) const loos::PDBvirtual
const_iterator typedef (defined in loos::AtomicGroup)loos::AtomicGroup
contactWith(const double dist, const AtomicGroup &grp, const uint min=1) const loos::AtomicGroupinline
contactWith(const double dist, const AtomicGroup &grp, const GCoord &box, const uint min=1) const loos::AtomicGroupinline
contains(const pAtom &p, const EqualsOp &op)loos::AtomicGroupinline
contains(const pAtom &p)loos::AtomicGroupinline
contains(const AtomicGroup &g, const EqualsOp &op)loos::AtomicGroupinline
contains(const AtomicGroup &g)loos::AtomicGroupinline
containsAny(const AtomicGroup &g, const EqualsOp &op)loos::AtomicGroupinline
containsAny(const AtomicGroup &g)loos::AtomicGroupinline
coordsAsVector() const (defined in loos::AtomicGroup)loos::AtomicGroup
copy(void) const loos::PDB
copyCoordinatesFrom(const AtomicGroup &g, const uint offset=0, const uint length=0)loos::AtomicGroup
copyMappedCoordinatesFrom(const AtomicGroup &g, const std::vector< uint > &order)loos::AtomicGroup
copyMappedCoordinatesFrom(const AtomicGroup &g)loos::AtomicGroup
create(const std::string &fname) (defined in loos::PDB)loos::PDBinlinestatic
deduceAtomicNumberFromMass(const double tol=0.1)loos::AtomicGroup
dipoleMoment(void) const loos::AtomicGroup
empty(void) const (defined in loos::AtomicGroup)loos::AtomicGroupinline
end(void) (defined in loos::AtomicGroup)loos::AtomicGroupinline
end(void) const (defined in loos::AtomicGroup)loos::AtomicGroupinline
excise(const int offset, const int len=0)loos::AtomicGroup
findBonds(const double dist=1.65)loos::AtomicGroup
findById(const int id) const loos::AtomicGroup
FormatConectRecords (defined in loos::PDB)loos::PDBfriend
fromAtomicGroup(const AtomicGroup &)loos::PDBstatic
getAtom(const int i) const loos::AtomicGroup
getCoords(double **outseq, int *m, int *n)loos::AtomicGroup
getResidue(pAtom res)loos::AtomicGroup
getTransformedCoords(const XForm &) const loos::AtomicGroup
groupFromID(const std::vector< int > &id_list) const loos::AtomicGroup
hasBonds(void) const loos::AtomicGroup
hasCoords(void) const loos::AtomicGroup
intersect(const AtomicGroup &g, const EqualsOp &op)loos::AtomicGroupinline
intersect(const AtomicGroup &g)loos::AtomicGroupinline
isPeriodic(void) const loos::AtomicGroupinline
iterator typedef (defined in loos::AtomicGroup)loos::AtomicGroup
length(void) const (defined in loos::AtomicGroup)loos::AtomicGroupinline
maxId(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
maxResid(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
merge(const AtomicGroup &g, const EqualsOp &op)loos::AtomicGroupinline
merge(const AtomicGroup &g)loos::AtomicGroupinline
mergeImage(pAtom &p)loos::AtomicGroup
mergeImage()loos::AtomicGroup
minId(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
minResid(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
momentsOfInertia(void) const loos::AtomicGroup
numberOfResidues(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
numberOfSegids(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
operator!=(AtomicGroup &rhs)loos::AtomicGroupinline
operator!=(const AtomicGroup &rhs) const loos::AtomicGroupinline
operator+(const AtomicGroup &rhs) (defined in loos::AtomicGroup)loos::AtomicGroup
operator+(const pAtom &rhs) (defined in loos::AtomicGroup)loos::AtomicGroup
operator+=(const AtomicGroup &rhs) (defined in loos::AtomicGroup)loos::AtomicGroup
operator+=(const pAtom &rhs) (defined in loos::AtomicGroup)loos::AtomicGroup
operator<<(std::ostream &, const PDB &)loos::PDBfriend
operator==(AtomicGroup &rhs)loos::AtomicGroup
operator==(const AtomicGroup &rhs) const loos::AtomicGroup
operator[](const int i)loos::AtomicGroup
operator[](const int i) const (defined in loos::AtomicGroup)loos::AtomicGroup
PDB() (defined in loos::PDB)loos::PDBinline
PDB(const std::string &fname)loos::PDBinlineexplicit
PDB(std::istream &ifs)loos::PDBinlineexplicit
periodicBox(void) const loos::AtomicGroupinline
periodicBox(const GCoord &c)loos::AtomicGroupinline
periodicBox(const greal x, const greal y, const greal z)loos::AtomicGroupinline
perturbCoords(const greal)loos::AtomicGroup
principalAxes(void) const loos::AtomicGroup
pruneBonds()loos::AtomicGroup
radius(const bool use_atom_as_reference=false) const loos::AtomicGroup
radiusOfGyration(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
read(std::istream &is)loos::PDB
reimage()loos::AtomicGroup
reimageByAtom()loos::AtomicGroup
remarks(void)loos::PDB
remarks(const Remarks &)loos::PDB
remove(pAtom pa)loos::AtomicGroupinline
remove(std::vector< pAtom > pas)loos::AtomicGroup
remove(const AtomicGroup &grp)loos::AtomicGroup
removePeriodicBox()loos::AtomicGroupinline
renumber(const int start=1, const int stride=1)loos::AtomicGroup
resetAtomIndices()loos::AtomicGroup
rmsd(const AtomicGroup &)loos::AtomicGroup
rotate(const GCoord &axis, const greal angle_in_degrees)loos::AtomicGroup
select(const AtomSelector &sel) const loos::AtomicGroup
setCoords(double *seq, int m, int n)loos::AtomicGroup
setGroupConnectivity() (defined in loos::AtomicGroup)loos::AtomicGroupprotected
sharedPeriodicBox() const loos::AtomicGroupinline
showCharge(bool b)loos::PDB
showCharge(void) const (defined in loos::PDB)loos::PDB
size(void) const (defined in loos::AtomicGroup)loos::AtomicGroupinline
sort(void)loos::AtomicGroup
sorted(void) const loos::AtomicGroupinline
sphericalVariance(const pAtom) const loos::AtomicGroup
sphericalVariance(const GCoord) const (defined in loos::AtomicGroup)loos::AtomicGroup
splitByMolecule(void) const loos::AtomicGroupinline
splitByName(void) const loos::AtomicGroup
splitByResidue(void) const loos::AtomicGroup
splitByUniqueSegid(void) const loos::AtomicGroup
strict(void) const (defined in loos::PDB)loos::PDB
strict(const bool b)loos::PDB
subset(const int offset, const int len=0)loos::AtomicGroup
superposition(const AtomicGroup &)loos::AtomicGroup
superposition_zero_singular_value (defined in loos::AtomicGroup)loos::AtomicGroupstatic
totalCharge(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
totalMass(void) const (defined in loos::AtomicGroup)loos::AtomicGroup
translate(const GCoord &v)loos::AtomicGroup
unitCell(void) (defined in loos::PDB)loos::PDB
unitCell(const UnitCell &) (defined in loos::PDB)loos::PDB
value_type typedef (defined in loos::AtomicGroup)loos::AtomicGroup
within(const double dist, AtomicGroup &grp) const loos::AtomicGroupinline
within(const double dist, AtomicGroup &grp, const GCoord &box) const loos::AtomicGroupinline
~AtomicGroup() (defined in loos::AtomicGroup)loos::AtomicGroupinlinevirtual
~PDB() (defined in loos::PDB)loos::PDBinlinevirtual