LOOS  v2.3.2
Class Index
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | X | Z
  A  
DCDWriter (loos)   Matrix44 (loos)   SharedPeriodicBox (loos)   WaterFilterAxis (loos::DensityTools)   
DensityGrid (loos::DensityTools)   MatrixReadError (loos)   SimpleAtom (loos::HBonds)   WaterFilterBase (loos::DensityTools)   
AbstractObserver (loos)   DensityGridIterator (loos::DensityTools)   MatrixReadImpl (loos)   SimpleCounter (loos)   WaterFilterBlob (loos::DensityTools)   
Action (loos::internal)   DensityGridPlane (loos::DensityTools)   MatrixReadImpl< T, Math::Triangular, S > (loos)   SimpleMeta (loos::DensityTools)   WaterFilterBox (loos::DensityTools)   
AggregateOptions (loos::OptionsFramework)   DensityGridRow (loos::DensityTools)   MatrixReadImpl< T, P, Math::SparseArray > (loos)   Simplex   WaterFilterCore (loos::DensityTools)   
AlignedVirtualTrajectory (loos.pyloos.trajectories)   DescendingSort (loos)   MatrixWriteImpl (loos)   SolventSelector (loos)   WaterFilterDecorator (loos::DensityTools)   
Amber (loos)   DistanceCutoff (ENM)   MatrixWriteImpl< T, Math::Triangular, S, F > (loos)   SparseArray (loos::Math)   WaterFilterRadius (loos::DensityTools)   
AmberNetcdf (loos)   DistanceWeight (ENM)   MatrixWriteImpl< T, P, Math::SparseArray, F > (loos)   SpringFunction (ENM)   WaterHistogrammer (loos::DensityTools)   
AmberRst (loos)   
  E  
ModelWithCoords (loos::OptionsFramework)   StreamWrapper (loos)   
  X  
AmberTraj (loos)   
  N  
SuperBlock (ENM)   
AndSelector (loos)   Edge (Voronoi)   SuperBlockDecorator (ENM)   XDRDataSizeError (loos)   
ANM (ENM)   ElasticNetworkModel (ENM)   NonzeroDensity (loos::DensityTools)   SuperRegion (Voronoi)   XDRReader (loos::internal)   
AscendingSort (loos)   DCD::EndOfFile (loos)   NotSelector (loos)   SystemNameBindingType (loos::internal)   XDRWriter (loos::internal)   
Atom (loos)   ErrorWithAtom (loos::HBonds)   NullEstimator (loos::DensityTools)   
  T  
XEDMWriter (loos::DensityTools)   
AtomCoordsEquals (loos)   EstimatingCounter (loos)   NumericalError (loos)   XForm (loos)   
AtomEquals (loos)   ExponentialDistance (ENM)   
  O  
Threshold (loos::DensityTools)   XTC (loos)   
AtomicGroup (loos)   
  F  
ThresholdRange (loos::DensityTools)   XTCWriter (loos)   
AtomicNumberDeducer (loos::internal)   OptionsError (loos)   Timer (loos)   
  Z  
AtomNameSelector (loos)   FileError (loos)   OptionsPackage (loos::OptionsFramework)   TimeSeries (loos)   
AtomSelector (loos)   FileOpenError (loos)   OrSelector (loos)   TinkerArc (loos)   ZClipEstimator (loos::DensityTools)   
  B  
FileReadError (loos)   OutputPrefix (loos::OptionsFramework)   TinkerXYZ (loos)   ZClippedWaterFilter (loos::DensityTools)   
FileReadErrorWithLine (loos)   OutputTrajectoryNameBindingType (loos::internal)   Trajectory (loos)   ZSliceEstimator (loos::DensityTools)   
Backbone (loos::internal)   FileWriteError (loos)   OutputTrajectoryOptions (loos::OptionsFramework)   Trajectory (loos.pyloos.trajectories)   ZSliceSelector (Voronoi)   
BackboneSelector (loos)   Fmt (loos)   OutputTrajectoryTypeOptions (loos::OptionsFramework)   TrajectoryNameBindingType (loos::internal)   ZSliceSelector (ConvexHull)   
BadSpringFunction (ENM)   
  G  
  P  
TrajectoryWithFrameIndices (loos::OptionsFramework)   ZSliceSelector (loos)   
BadSpringParameter (ENM)   TrajectoryWriter (loos)   
  d  
BasicConvergence (loos::OptionsFramework)   Gromacs (loos)   ParseError (loos)   Triangular (loos::Math)   
BasicMatrixFormatter (loos::internal)   
  H  
Parser (loos)   TriggerAlways (loos)   drop (loos::internal)   
BasicOptions (loos::OptionsFramework)   ParserDriver (loos)   TriggerEvery (loos)   dup (loos::internal)   
BasicProgress (loos)   HBondDetector (loos)   PDB (loos)   TRR (loos)   
  e  
BasicSelection (loos::OptionsFramework)   HCA (ENM)   PDBTraj (loos)   TwoModelsWithCoords (loos::OptionsFramework)   
BasicSplitBy (loos::OptionsFramework)   HeavyAtomSelector (loos)   PercentProgress (loos)   
  U  
equals (loos::internal)   
BasicTrajectory (loos::OptionsFramework)   HeavySolventSelector (loos)   PercentProgressWithTime (loos)   extractNumber (loos::internal)   
BasicWater (loos::OptionsFramework)   Hydrogen (loos::internal)   PercentTrigger (loos)   UniformSpringFunction (ENM)   
  g  
BoundFmt (loos)   HydrogenSelector (loos)   PeriodicBox (loos)   UniqueStrings (loos)   
BoundSuperBlock (ENM)   
  I  
PreciseMatrixFormatter (loos)   UnitCell (loos)   greaterThan (loos::internal)   
BulkedWaterFilter (loos::DensityTools)   ProgressCounter (loos)   Atom::UnsetProperty (loos)   greaterThanEquals (loos::internal)   
BulkEstimator (loos::DensityTools)   IndexSelector (loos)   PSF (loos)   UnsetProperty (loos)   
  l  
  C  
AtomicGroup::Iterator (loos)   
  R  
UserTimer (loos)   
  K  
  V  
lessThan (loos::internal)   
CAlphaSelector (loos)   Region (Voronoi)   lessThanEquals (loos::internal)   
CCPDB (loos)   Kernel (loos)   Remarks (loos)   Value (loos::internal)   logicalAnd (loos::internal)   
CHARMM (loos)   KernelSelector (loos)   RequiredArguments (loos::OptionsFramework)   ValueStack (loos::internal)   logicalNot (loos::internal)   
ColMajor (loos::Math)   
  L  
ResidRangeSelector (loos)   VirtualTrajectory (loos.pyloos.trajectories)   logicalOr (loos::internal)   
ConstBonded (ENM)   RowMajor (loos::Math)   VoronoiError (Voronoi)   logicalTrue (loos::internal)   
ConvexHull (ConvexHull)   LineReader (loos)   
  S  
VoronoiWrapper (Voronoi)   
  m  
Coord (loos)   LOOSError (loos)   VSA (ENM)   
  D  
  M  
ScientificMatrixFormatter (loos)   
  W  
matchRegex (loos::internal)   
SegidSelector (loos)   matchStringAsRegex (loos::internal)   
DCD (loos)   Matrix (loos::Math)   SharedArray (loos::Math)   WallTimer (loos)   
  p  
pushAtomChainId (loos::internal)   
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