3 axis_with_membrane computes the cosine between the first
4 principal axis of a selection and the Z-axis (i.e. the putative membrane
5 normal). This is written out for a trajectory as a time series...
9 This file is part of LOOS.
11 LOOS (Lightweight Object-Oriented Structure library)
12 Copyright (c) 2012 Tod Romo, Grossfield Lab
13 Department of Biochemistry and Biophysics
14 School of Medicine & Dentistry, University of Rochester
16 This package (LOOS) is free software: you can redistribute it and/or modify
17 it under the terms of the GNU General Public License as published by
18 the Free Software Foundation under version 3 of the License.
20 This package is distributed in the hope that it will be useful,
21 but WITHOUT ANY WARRANTY; without even the implied warranty of
22 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
23 GNU General Public License for more details.
25 You should have received a copy of the GNU General Public License
26 along with this program. If not, see <http://www.gnu.org/licenses/>.
model_name = sys.argv
traj_name = sys.argv
selection = sys.argv
axes = frame.principalAxes()
Python-based wrapper for LOOS Trajectories This class turns a loos Trajectory into something more pyt...
AtomicGroup createSystem(const std::string &filename, const std::string &filetype)